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在linux用pip安装时遇到问题,弄不清该怎么解决,情况如下:
- myenv/bin/pip install misopy
- Collecting misopy
- /home/gentai/myenv/lib/python2.6/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:79: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning.
- InsecurePlatformWarning
- Downloading misopy-0.5.3.tar.gz (1.5MB)
- 100% |████████████████████████████████| 1.5MB 238kB/s
- Collecting matplotlib (from misopy)
- Downloading matplotlib-1.4.3.tar.gz (50.4MB)
- 100% |████████████████████████████████| 50.4MB 7.8kB/s
- Collecting numpy>=1.5.0 (from misopy)
- /home/gentai/myenv/lib/python2.6/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:79: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning.
- InsecurePlatformWarning
- Downloading numpy-1.9.2.tar.gz (4.0MB)
- 100% |████████████████████████████████| 4.0MB 63kB/s
- Collecting scipy>=0.9.0 (from misopy)
- Downloading scipy-0.15.1.tar.gz (11.4MB)
- 100% |████████████████████████████████| 11.4MB 28kB/s
- Collecting pysam>=0.6.0 (from misopy)
- /home/gentai/myenv/lib/python2.6/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:79: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning.
- InsecurePlatformWarning
- Downloading pysam-0.8.3.tar.gz (1.5MB)
- 100% |████████████████████████████████| 1.5MB 67kB/s
- Collecting six>=1.4 (from matplotlib->misopy)
- Downloading six-1.9.0-py2.py3-none-any.whl
- Collecting python-dateutil (from matplotlib->misopy)
- Downloading python_dateutil-2.4.2-py2.py3-none-any.whl (188kB)
- 100% |████████████████████████████████| 192kB 42kB/s
- Collecting pytz (from matplotlib->misopy)
- Downloading pytz-2015.4-py2.py3-none-any.whl (475kB)
- 100% |████████████████████████████████| 475kB 110kB/s
- Collecting pyparsing!=2.0.0,>=1.5.6 (from matplotlib->misopy)
- Downloading pyparsing-2.0.3-py2.py3-none-any.whl
- Collecting nose>=0.11.1 (from matplotlib->misopy)
- Downloading nose-1.3.6-py2-none-any.whl (154kB)
- 100% |████████████████████████████████| 155kB 1.9MB/s
- Collecting mock (from matplotlib->misopy)
- Downloading mock-1.0.1.tar.gz (818kB)
- 100% |████████████████████████████████| 819kB 68kB/s
- Installing collected packages: numpy, six, python-dateutil, pytz, pyparsing, nose, mock, matplotlib, scipy, pysam, misopy
- Running setup.py install for numpy
- Running setup.py install for mock
- Running setup.py install for matplotlib
- Running setup.py install for scipy
- Complete output from command /home/gentai/myenv/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-6dzmdK/scipy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-ODDCIw-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/gentai/myenv/include/site/python2.6/scipy:
- lapack_opt_info:
- openblas_lapack_info:
- libraries openblas not found in ['/home/gentai/myenv/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
- NOT AVAILABLE
-
- lapack_mkl_info:
- mkl_info:
- /home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/system_info.py:594: UserWarning: Specified path /opt/intel/icc/composer_xe_2013.3.163/mkl/lib/em64t is invalid.
- warnings.warn('Specified path %s is invalid.' % d)
- libraries mkl,vml,guide not found in []
- NOT AVAILABLE
-
- NOT AVAILABLE
-
- atlas_3_10_threads_info:
- Setting PTATLAS=ATLAS
- libraries tatlas,tatlas not found in /home/gentai/myenv/lib
- libraries lapack_atlas not found in /home/gentai/myenv/lib
- libraries tatlas,tatlas not found in /usr/local/lib64
- libraries lapack_atlas not found in /usr/local/lib64
- libraries tatlas,tatlas not found in /usr/local/lib
- libraries lapack_atlas not found in /usr/local/lib
- libraries tatlas,tatlas not found in /usr/lib64/atlas
- libraries lapack_atlas not found in /usr/lib64/atlas
- libraries tatlas,tatlas not found in /usr/lib64/sse2
- libraries lapack_atlas not found in /usr/lib64/sse2
- libraries tatlas,tatlas not found in /usr/lib64
- libraries lapack_atlas not found in /usr/lib64
- libraries tatlas,tatlas not found in /usr/lib
- libraries lapack_atlas not found in /usr/lib
- numpy.distutils.system_info.atlas_3_10_threads_info
- NOT AVAILABLE
-
- atlas_3_10_info:
- libraries satlas,satlas not found in /home/gentai/myenv/lib
- libraries lapack_atlas not found in /home/gentai/myenv/lib
- libraries satlas,satlas not found in /usr/local/lib64
- libraries lapack_atlas not found in /usr/local/lib64
- libraries satlas,satlas not found in /usr/local/lib
- libraries lapack_atlas not found in /usr/local/lib
- libraries satlas,satlas not found in /usr/lib64/atlas
- libraries lapack_atlas not found in /usr/lib64/atlas
- libraries satlas,satlas not found in /usr/lib64/sse2
- libraries lapack_atlas not found in /usr/lib64/sse2
- libraries satlas,satlas not found in /usr/lib64
- libraries lapack_atlas not found in /usr/lib64
- libraries satlas,satlas not found in /usr/lib
- libraries lapack_atlas not found in /usr/lib
- numpy.distutils.system_info.atlas_3_10_info
- NOT AVAILABLE
-
- atlas_threads_info:
- Setting PTATLAS=ATLAS
- libraries ptf77blas,ptcblas,atlas not found in /home/gentai/myenv/lib
- libraries lapack_atlas not found in /home/gentai/myenv/lib
- libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
- libraries lapack_atlas not found in /usr/local/lib64
- libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
- libraries lapack_atlas not found in /usr/local/lib
- libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/atlas
- libraries lapack_atlas not found in /usr/lib64/atlas
- libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/sse2
- libraries lapack_atlas not found in /usr/lib64/sse2
- libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
- libraries lapack_atlas not found in /usr/lib64
- libraries ptf77blas,ptcblas,atlas not found in /usr/lib
- libraries lapack_atlas not found in /usr/lib
- numpy.distutils.system_info.atlas_threads_info
- NOT AVAILABLE
-
- atlas_info:
- libraries f77blas,cblas,atlas not found in /home/gentai/myenv/lib
- libraries lapack_atlas not found in /home/gentai/myenv/lib
- libraries f77blas,cblas,atlas not found in /usr/local/lib64
- libraries lapack_atlas not found in /usr/local/lib64
- libraries f77blas,cblas,atlas not found in /usr/local/lib
- libraries lapack_atlas not found in /usr/local/lib
- libraries f77blas,cblas,atlas not found in /usr/lib64/atlas
- libraries lapack_atlas not found in /usr/lib64/atlas
- libraries f77blas,cblas,atlas not found in /usr/lib64/sse2
- libraries lapack_atlas not found in /usr/lib64/sse2
- libraries f77blas,cblas,atlas not found in /usr/lib64
- libraries lapack_atlas not found in /usr/lib64
- libraries f77blas,cblas,atlas not found in /usr/lib
- libraries lapack_atlas not found in /usr/lib
- numpy.distutils.system_info.atlas_info
- NOT AVAILABLE
-
- /home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/system_info.py:1505: UserWarning:
- Atlas (http://math-atlas.sourceforge.net/) libraries not found.
- Directories to search for the libraries can be specified in the
- numpy/distutils/site.cfg file (section [atlas]) or by setting
- the ATLAS environment variable.
- warnings.warn(AtlasNotFoundError.__doc__)
- lapack_info:
- libraries lapack not found in ['/home/gentai/myenv/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
- NOT AVAILABLE
-
- /home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/system_info.py:1516: UserWarning:
- Lapack (http://www.netlib.org/lapack/) libraries not found.
- Directories to search for the libraries can be specified in the
- numpy/distutils/site.cfg file (section [lapack]) or by setting
- the LAPACK environment variable.
- warnings.warn(LapackNotFoundError.__doc__)
- lapack_src_info:
- NOT AVAILABLE
-
- /home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/system_info.py:1519: UserWarning:
- Lapack (http://www.netlib.org/lapack/) sources not found.
- Directories to search for the sources can be specified in the
- numpy/distutils/site.cfg file (section [lapack_src]) or by setting
- the LAPACK_SRC environment variable.
- warnings.warn(LapackSrcNotFoundError.__doc__)
- NOT AVAILABLE
-
- Running from scipy source directory.
- Traceback (most recent call last):
- File "<string>", line 1, in <module>
- File "/tmp/pip-build-6dzmdK/scipy/setup.py", line 249, in <module>
- setup_package()
- File "/tmp/pip-build-6dzmdK/scipy/setup.py", line 246, in setup_package
- setup(**metadata)
- File "/home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/core.py", line 135, in setup
- config = configuration()
- File "/tmp/pip-build-6dzmdK/scipy/setup.py", line 173, in configuration
- config.add_subpackage('scipy')
- File "/home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage
- caller_level = 2)
- File "/home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage
- caller_level = caller_level + 1)
- File "/home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py
- config = setup_module.configuration(*args)
- File "scipy/setup.py", line 16, in configuration
- config.add_subpackage('linalg')
- File "/home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage
- caller_level = 2)
- File "/home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage
- caller_level = caller_level + 1)
- File "/home/gentai/myenv/lib/python2.6/site-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py
- config = setup_module.configuration(*args)
- File "scipy/linalg/setup.py", line 18, in configuration
- raise NotFoundError('no lapack/blas resources found')
- numpy.distutils.system_info.NotFoundError: no lapack/blas resources found
- ----------------------------------------
- <span style="color: Red;">Command "/home/gentai/myenv/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-6dzmdK/scipy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-ODDCIw-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/gentai/myenv/include/site/python2.6/scipy" failed with error code 1 in /tmp/pip-build-6dzmdK/scipy</span>
复制代码
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